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Guide to Patagonia's Monsters & Mysterious beings

I have written a book on this intriguing subject which has just been published.
In this blog I will post excerpts and other interesting texts on this fascinating subject.

Austin Whittall


Showing posts with label hominid. Show all posts
Showing posts with label hominid. Show all posts

Tuesday, February 4, 2014

More on the useless Mitochondrial DNA Clock


I wrote my previous post (The mtDNA clock ticks out of time) on the reliability of the mitochondrial DNA "clock" after doing my research on the D4h3 haplogroup (hg) in America for my post on it [mtDNA D4h3a (Continued)].


At the time, the variability in the amount of mutations along each lineage drew my attention. How could all these living people who came from a common root have differing amounts of mutations? After all, if there was a clock ticking of mutations at a steady rate, then all these people would have the same quantity of mutations. Well they don't. So, I suspected the clock was not reliable.


The smoking gun


The following image shows part of the tree that drew my attention:


mtDNA clock is wrong

D4 to Dh43 haplogroup (hg)tree, with mutations. From [1]

I will just take a part of the whole tree to make my point:


  • Between the root at D4 and D1 there are 2 mutations (marked in red on the image as 2 m), and the time that has passed is 23.5 - 17.8 ky. That is: one mutation every 11.72 - 8.9 ky.
  • Between root D4 and D4h3 there are 7 mutations (7 m), so you would expect them to be 77 to 63 ky apart, but no, surprisinglythis branch is between 500 and 2,500 years YOUNGER than its root. What sort of a tree is this? branches are born before the root?
  • Between D4h3 and some extant humans which I have chosen and marked with violet, we have:
    • 10 mutations to individual #01
    •  9 mutations to individual #26
    • 18 mutations to individual #17
    You could argue that #26 and #10 had accumulated mutations at almost the same speed (barely 10% difference between them) but #17 lineage has mutated twice as fast as the other two did.
  • Between D4h3a (in blue) and the extant humans on the bottom row, the amount of mutations varies between 3 and 12. A Four fold difference. The average is 6.95 mutations. I made a graph with these mutations and, surprise, it has a roughly bimodal distribution (the type I mentioned in my previous post). See below:
  • Finally, the D4h3a haplogroup is dated at 18 - 14.3 kya, so based on the maximum and minimum mutations mentioned above (12 and 3) the clock can tick anywhere between: 1,191 and 6,000 years per mutation! (compare that to the 11,720 to 8,900 years calculated further up and you can see why the clock is pointless).

Bimodal distribution of mutations in D4h3a haplogroup. Copyright © 20154 by Austin Whittall


Implications of mtDNA clock violations


Despite these blatant violations of a mtDNA clock I thought that somehow I had misinterpreted the data or not understood how the mechanism works, so I did some research into the "clock" issue. The outcome was yesterday's post which substantiates (based on scholarly papers) that the clock ticks with variable rates.


The sad part is that time and time again, paper after paper I see dates defined for our Most Recent Common Ancestors (MRCA) and entry dates into America based on this non-existent clock.


Take the following example (Behar et al, 2014): “As the clock violation was observed only in a restricted number of specified cases, we applied the best available tools for estimating the ages of ancestral nodes.” [4].


The "best available tools" may surely be the orthodox point of view: A very long (>100 ky) incubation period in Africa, a small failed entry into the Middle East where modern humans briefly occupied the region some 90 kya. A sudden migration "out of Africa" some 50 kya followed by a quick expansion across southern Asia, Europe and Australia. A slower march north across East Asia and Siberia and a very late (<25 ky) entry into America.


I now believe that the mtDNA clock is irrelevant, it is guesswork and adjusted "by hand" to fit the dates defined by the orthodox point of view.


With this in mind, I believe that it is very likely that a group of humans could have left Africa with L3 haplogroup (hg). anytime between the 200 - 80 kya (yes the "failed" migration that took place 90 kya, could have been earlier), and then mutated along the M hg and D hg branches in say, 20 ky, allowing an entry into America of Modern Humans anytimg between 180 and 60 kya.


And I specifically give a very ancient date of 200 kya for the appearance of modern humans based on a Y chromosome haplogroup (Mendez et al, 2013) named A00 which was dated to: "338 thousand years ago (kya) (95% confidence interval = 237-581 kya). Remarkably, this exceeds current estimates of the mtDNA TMRCA, as well as those of the age of the oldest anatomically modern human fossils. The extremely ancient age combined with the rarity of the A00 lineage, which we also find at very low frequency in central Africa, point to the importance of considering more complex models for the origin of Y chromosome diversity. These models include ancient population structure and the possibility of archaic introgression of Y chromosomes into anatomically modern humans. [5]"


This early date is resisted by orthodoxy arguing that mtDNA and skeletal remains give more recent dates and therefore argue that the mutation rate used to estimate the TMRCA for the Y chromosome was simply too low [6]. (I don't trus the mtDNA clock, and regarding bones... maybe the oldest human fossils have not yet been found.)


An early and rapid dispersion across Central and Eastern Asia could account for ancient Humans such as those found at Zhirendong, China with a minimum age of 100 - 113 kya (Wu et al, 2010). Fossils which prove that the "90 kya" migration into Asia was not a failure, the migrating humans settled in China.


These fossils have a mosaic of modern and archaic features (like a chin) that:


" any “dispersal” involved substantial admixture between dispersing early modern human populations
[...]
It therefore indicates a prolonged (>50,000 y) coexistence of late archaic and early modern humans across portions of Eurasia, and not just between Africa and Eurasia. Those late archaic humans include the Neandertals in western Eurasia until mid-MIS 3. They also encompass MIS 3 archaic humans in central Asia and Siberia and into at least MIS 5 in northern China..." [2]


Here we have a good explanation for the high proportion of Neanderthal genome in modern East Asians (Vernot and Akay, 2014) who have +20% more Neanderthal genes than Europeans.


It is a pity that Amerindians were not included in the study, it is likely that they have even more Neander genome than East Asians (based on other traits that they have inherited in a higher proportion than East Asians).


Have you noticed that Native Americans are rarely included in these studies?


Apparently 30% of Neanderthal's genome ended up in humans, of course no individual has more than 1 to 3%, but combine all those bits and pieces and it is one third of H. sapiens genome.


But getting to the point. Vernot and Akay suggest that Asians have more Neanderthal genes because there were two admixture events. One just after modern Humans left Africa and before they split into the Asian and European populations. And another, between Asians and Neanderthals after they split from the forebearers of modern Europeans. This double admixture gave them a higher dosage of Neanderthal DNA.


Sources


[1] Fig. S1. From Ugo Perego et al, Current Biology, Volume 19 1. Supplemental Data Distinctive Paleo-Indian Migration Routes from Beringia Marked by Two Rare mtDNA Haplogroups
[2] Wu Liua et al., (2010). Human remains from Zhirendong, South China, and modern human emergence in East Asia www.pnas.org/cgi/doi/10.1073/pnas.1014386107
[3] Vernot, B. and Akay, J., (2014). Resurrecting Surviving Neandertal Lineages from Modern Human Genomes. Science, DOI: 10.1126/science.1245938
[4] Behar, D., et al., (2014). A “Copernican” Reassessment of the Human Mitochondrial DNA Tree from its Root. American Journal of Human Genetics, Volume 90, Issue 4, 675-684, 6 April 2012 doi:10.1016/j.ajhg.2012.03.002
[5] Mendez et al., (2013). An African American paternal lineage adds an extremely ancient root to the human Y chromosome phylogenetic tree. Am J Hum Genet. 2013 Apr 4;92(4):637.
[6] Wilson Sayres, Timing of ancient human Y lineage depends on the mutation rate: A comment on Mendez et al. http://arxiv.org/ftp/arxiv/papers/1304/1304.6098.pdf



Patagonian Monsters - Cryptozoology, Myths & legends in Patagonia Copyright 2009-2014 by Austin Whittall © 

Sunday, January 5, 2014

Lovelock Skull and Spirit Cave Man- Nevada


Besides the skulls of the "Nebraska Loess Man" (posted yesterday), other odd looking skulls have been found in the U.S., of course, they received a similar treatment, they are classed as normal, and any unusual features are noted but their real cause is assumed as natural variations (i.e. within normality), instead of wondering if they could belong to another more primitive or archaic human, they are boxed off as recent H. sapiens remains.


The Skull


lovelock skull

Lovelock skull, notice the occipital bun and the brows (arrows). From [1]

The skull of an adult male was found in 1967, 3 miles southwest of Lovelock cave, in a salt-flat.


It had a "notably strong browridge... strong nuchal crest [one running along the center of the rear part of the skull, though not apparent in the photographs] ...retreating forehead ... massive occipital torus or crest".[1]


It was classed among the "Early Period Central California material", which also have big occipital buns and glabellar prominences (crest between the eyes above the nose).


Therefore it is not of "any great antiquity" not more than 6.000 BC.


However, "occipital buns" are a feature found in 81.8% of Neanderthal skulls but only in 60% of Upper Paleolithic Modern Humans. [2] It is rare among modern Humans. Maybe the native American found at Lovelock was one of those "select few" modern humans who have a bun. Or he had a high proportion of Neanderthal genes in him.


Spirit Cave


However, there are other clues: A mummified body of a man was recovered from Spirit Cave also at Lovelock, Nevada in 1940; it was dated in 1994 to 10,630 Ka. It was contested in a court of law by the local Paiute natives who have lived there as far as anyone can remember, they wanted to keep it out of a museum and bury it (read more and even more on the issue of "repatriating" native American remains, which also concerns another "caucasoid": Kennewick man and placed his remains in a legal limbo).


The unusual “Caucasoid” features of the cave-man are quite unlike those of current Native Americans (Paiute) living in the area in historic times, Spirit Cave man exhibits “Caucasoid” features and "Red hair" (which was attributed to decoloring due to the salt of the nearby salt-flats).[4]


Interestingly, the Paiute natives of Nevada, according to a book written in 1883 by one of them, Winnemucca, a Chief's daughter, tells us how they exterminated a “small tribe of barbarians” known as “people-eaters"; who waylayed them to “kill and eat them”. They “had reddish hair” from which the Paitue later made dresses. [3]


Red hair is not at all common among Amerindians or East Asians but Neanderthal had the MC1R gene (melanocortin 1 receptor) associated with red hair in humans.[5]


So maybe a band of relict Neanderthals lived in Nevada until quite recently and were wiped out by the Paiute.


Sources


[1] Reed, E., (1967). An Unusual Human Skull from near Lovelock, Nevada, University of Utah Press. Miscellaneous Collected Papers, No.18.
[2] Ahern, J. link
[3] Hopinks Winnemucca, (1883). Life among the Piutes, their wrongs and claims. Putnam’s. N. York. P 73
[4] Barker, C Ellis, S. Damadio, (2000). Determination of cultural affiliation of ancient human remains from Spirit Cave. Nevada P Bureau of Land Management Nevada State Office.
[5] Lalueza-Fox, C., Römpler, H., Hofreiter M., et al., (2007). A melanocortin 1 receptor allele suggests varying pigmentation among Neanderthals. Science, October 25, 2007


Patagonian Monsters - Cryptozoology, Myths & legends in Patagonia Copyright 2009-2014 by Austin Whittall © 

Tuesday, July 23, 2013

Denisovans, Neandertals and the peopling of America


Skoglunda and Jakobssona postulated in a paper [1] published in 2011 that the apparent inflow of archaic genes into modern humans in two separate episodes (one involving Neandertals and the other Denisovans) is not totally correct, at least regarding Neanderthals.


Their computer simulations suggest that an archaic admixture event (not out of Africa, but in Africa) would result in the current pattern of higher similarity with Neanderthals the further you go from Africa.


This would be caused by genetic drift and ascertainment bias, and the outcome is "artificial differences between populations that have exactly the same admixture history." [1]


However the Denisovan genes in Austronesians and South East Asians could not be explained away by the same cause and the "results suggest admixture between Denisovans or a Denisova-related population and the ancestors of East Asians..." [1]


Comment


Ascertainment bias is a systematic distortion in measuring the true frequency of a phenomenon due to the way in which the data are collected: the sampling may cause some members of the population to be less likely to be included in the sample than others. This distorts the randomness of the population, which is not equally balanced or objectively represented.


The study


Their study defines two principal components (PCs) using Denisova, Neandertal, chimpanzee and modern human data.


They obtained a PC1 component which describes general genetic similarity to archaic humans (genomes of both Neandertals and Denisovans - it separates the archaic humans from chimps) and a PC2 which contrasts genetic similarity between Denisovans and Neandertals (it separates Denisovans from Neandertals).


Findings


They detected:


  • That moden humans can be grouped into three clusters: Africans, Oceanians and the other non-Africans. See Figure 1B below
  • That PC1 and PC2 were correlated with geography in America and Eurasia, they find this incompatible with existing admixture theories since they expect homogeneous admixture of archaic ancestry in all non-Africans.
  • The "East Asian [...] and Native American [...] populations were found to be more similar to archaic hominins compared with European and Central/South Asian populations"
  • Also the further the populations were from our African homeland, the greater the "archaic ancestry signal". Seen in Fig. 1C

Figures taken from [1].


human groups

Notice in 1B how Native Americans are closer to Neanderthals and further from Denisovans (to which the Oceanians are closer).


Fig. 1C, also shows that both these groups have a greater "signal" of archaic ancestry. (Click on image above to enlarge)


archaic ancestry

Fig. 1D, shows a high Denisovan frequency in Oceania and South East Asia as well as the expected high Neandertal frequency in their former homeland (Europe and Middle East, North Africa), but unexpectedly high in Central America, Mexico and northern South America.


They suggest that these Neandertal genes came to America after its discovery by Europeans with the influx of settlers from that region ("individuals that were skewed to having European ancestry" [1]), and they add that the "remaining pattern of increased signs of archaic ancestry in American populations more distant from Africa is in line with the joint effect of ascertainment bias and genetic drift" [1].


It could also be possible that Neandertals migrated to America and settled there in Mesoamerica, admixing later with modern humans who migrated to America later through Beringia.


Surprisingly the authors state that there is an "apparent absence of Denisova ancestry in Native Americans" is probably due to the bias that makes Neanderthal genome higher in America due to genetic drift and the ascertainment bias.


denisova neandertal content

As far as I can see, there is a high Neandertal frequency but also a high Denisovan one too.


Taking a look at Fig 1E, which replicates the same data as Fig 1D in Europe, SE Asia and Oceania, it clearly shows a high Denisovan frequency in Northwestern South America (Colombia, Ecuador)


Why?


Could it be due to an influx of SE Asian navigators' genes in the region (a junk sailing across the Pacific from China to Peru? or does it reflect an ancient migration of Denisovans into America long before modern humans ventured into the region to admix there, in America, with this relict Denisovan population?


If the latter was the case, then it is not a statistical artifact (bias in sampling), but a "real" admixture of genes. The Lack of Denisovan genes in Northern Asia is due to the fact that these genes did not arrive in America via Beringia carried by modern humans, they came long before, inside the bodies of the migrating Denisovans.


The authors however elaborate further by saying that if Americans lack Denisovan genes then their ancestors left Asia before admixture and, tainted with what I call the "recent-peopling-of-America-bias" they place this event some 14- 30 kya.


The maps clearly show an "island" between Mexico and Ecuador where there is a higher proportion of both Neanderthal and Denisovan genes in America. Is it due to a statistical bias? or is it faint proof of the ancient peopling of America by those archaic humans?


Our next post will deal with some odd skulls that were discovered in that region of South America, in Ecuador, and a possible link to H. erectus.


Sources


[1] Pontus Skoglunda, and Mattias Jakobssona, (2011) Archaic human ancestry in East Asia. www.pnas.org/cgi/doi/10.1073/pnas.1108181108
Patagonian Monsters - Cryptozoology, Myths & legends in Patagonia Copyright 2009-2013 by Austin Whittall © 

Saturday, June 9, 2012

The Chilludo - A Patagonian Yeti




lon chaney
Lon Chaney as the werewolf. Would The Chilludo look like him?

The Chilludo is another Patagonian hominid, which I mentioned briefly in a post (Patagonian Bigfoot?). Today’s entry will deal with this strangely named being.

Origin of the name

Though the word “chilludo” may seem to derive from the Spanish verb “chillar” which means to scream, to yell, to screech, to squeal or to squeak, it actually comes from a local Argentine word: “Chilludo: Said of people who have long straight and bristly hair or the body covered with this type of hair”.

The word is applied to sheep and goats that have long straight wool (Lincoln variety sheep are “chilludos” while Merino sheep are not).

Sightings

The only “old” source that I can find referring to it is in Gregorio Alvarez (1889-1986), who was Patagonia’s first native born to graduate as a Doctor in medicine in 1919. His book El Tronco de Oro compiles his anecdotes and experience during his years as a country doctor who rode about on horseback taking care of the ill children in the Andean region of Neuquén province.

Trivia: a dinosaur discovered in that region in 1991 bears the name Alvarezsaurus.

So, getting back to the Chilludo. Alvarez recorded it in the 1950s:

”The Chilludo” is the name of a giant that appeared for the first time at Colo Michi Co, a rugged place where the stones engraved by the ancient Pehunches can be found, and whose meaning is still a mystery. According to don Julio Della Cha, the first report of the apparition of The Chilludo was around 1950. A youth, upon seing it, lost his mind.
[...]
He is described like “a big man” covered with long hair (chillas), that runs and jumps about the mountain slopes and gullies; a kind of yeti or snowman like those seen in the Himalayas

He adds that in that same place, Colo Michi Co, a Hungarian miner named Bela Beico also went mad (Patagonian Cabin Fever?)

According to another source, this man, Della Cha, owned a ranch in the area, at Cancha Huinganco, close by, so the man existed.

The stones mentioned by Alvarez, engraved by the native Pehuenche Indians, can be seen online at the following site:
Colo Michi Co rock art, they date back to about 500 AD.

Sources

Gregorio Alvarez. (1981) El tronco de oro: folklore del Neuquén. pp. 116.



Patagonian Monsters - Cryptozoology, Myths & legends in Patagonia Copyright 2009-2012 by Austin Whittall © 

Tuesday, May 29, 2012

Oxford-Lausanne Collateral Hominid Project



Yes, you can now prove that those tufts of hair or organic matter that you believe belongs to bigfoot or yeti, are real. A team of scientists has requested that you send them these samples for DNA Analysis and publication in a formal scientific journal!



The Oxford-Lausanne Collateral Hominid Project



Prof. Bryan Sykes and Dr. Michel Sartori, write at their site: "As part of a larger enquiry into the genetic relationship between our own species Homo sapiens and other hominids, we invite submissions of organic material from formally undescribed species, or “cryptids”, for the purpose of their species identification by genetic means.".



Read more at the Oxford University's Wolfson College site




Patagonian Monsters - Cryptozoology, Myths & legends in Patagonia Copyright 2009-2012 by Austin Whittall © 

Sunday, May 6, 2012

HTLV-II and the peopling of America


HTLV-2 in Africa
Map showing HTLV-II in Central Africa. Copyright © 2012 by Austin Whittall

Human T cell leukemia / lymphoma virus (HTLV) is found in four types numbered from one to four, they are closely linked to similar virus found among simians (STLV). Collectively, the HTLV groups and their STLV analogues are called “primate T-lymphotropic viruses” (PTLV).


In today’s post we will focus on the two main HTLVs (they are retrovirus that causes cancer and other disorders). The first of them is known as HTLV-I; it is closely related to a simian virus (STLV-I) and is considered an Old World virus, which has affected both humans and apes in Asia and Africa for milennia. [2]


The other type, HTLV-II is a cosmopolitan endemic illness among Intravenous Drug Users (IUD) all around the world. However, in 1990, it was unexpectedly discovered among an isolated group of American Indians, the Guaymi in Panama and a year later among other native Americans in the US. This came as quite a surprise which is difficult to explain how it could have appeared among separate Amerindian groups.


HTLV-II the American virus


Further research has established that HTLV-II is found among highly separated and often geographically isolated native American groups and this poses a problem because, highly influenced by the prevailing theories, nobody dates the arrival of HTLV-II type to America beyond the established 10,000 - 40,000 years ago that fits the orthodox temporal window for the Asian migration into the New World through Beringia.


As we mentioned above, HTLV-II, is prevalent all across the globe in intravenous-drug users (IUD), and the dispersal they caused is a very recent event. They surely picked up the infection sharing needles with Native Americans in the US, however the point of origin is not yed defined.


The interesting part is that prior to IUD dispersal, HTLV-II was only found in America, where two (actually three) subtypes can be found:


  • HTLV-IIa is only found exclusively among some groups of American Indians such as the American Indian tribes of North, Central, and South America, including the Navajo and Pueblo in New Mexico and the Kayapo, Kraho, and Kaxuyana in Brazil. (this endemic Brazilian Amazonian subcluster is slightly different and have been designated as HTLV-IIc[1], it may differ due to a founder effect and is intimately linked to the original Paleo Indians who peopled the region.[10]
  • HLTV-IIb is the other strain which is also found exclusively among Amerindians: Guaymi in Panama, the Wayu and Guahibo in Colombia, the Toba and Mataco in Argentina, and some Navajo and Pueblo in New Mexico. It is known as the “Paleo Indian strain” [7] [1]

As it was found among isolated Amerindian groups, and at high frequencies, initially the HTLV-II virus was thought to have originated in America. However, and this is another surprising fact, the virus is also present among Pygmies in Africa.


The fact that there are two reservoirs of HTLV-II, one in indigenous American populations and the other in African pygmies, groups which are as far apart within H. sapiens as one can find, is indeed a deep mystery.


The Pygmy connection: Africa


Besides infecting Pygmies, there is also an African simian virus very similar to HTLV-II that affects bonobos (a relative of the chimpanzees). This may indicate an African origin for the human virus, derived from the simian one. Furthermore, HTLV-IIb is found among Cameroonian Pygmy people but has very close phylogenetic relation with Amerindian HTLV-2b strains. [1].


The strains are “highly similar to each other (below 1% nucleotide divergence) , as well as to Amerindian HTLV-2b strains”[9]; a molecular clock analysis indicates that it has been endemic among the Bakola Pygmies for “a long time”.[9]


The HTLV-b strain has also been found in a non-Pygmy Gabonese family. If we cannot rule out some transoceanic contact with Paleoindians, then this virus must have originated in Africa [7]. We will look into this later (see below: Conclusions).


There is also another strain, HTLV-IId discovered among the Congolese Efe Pygmy (Bambuti Pygmies), a group which is not very admixed with other groups and are considered one of the oldest African people.[1]


So, we have two distinct groups of Pygmies infected with two different subtypes of HTLV-II, the Bambuti and the Bakola, each located at the extreme eastern and western points of the Pygmy territory. These are people which are completely different from their neighbors with whom they do not mix and have been separated from them for ten to twenty thousand years . Their isolation and lack of admixture means that they must be an ancient reservoir of the HTLV-II virus. [7]


The paper that deals with the Pygmy strain of HTLV-IId, [1], states that as the closest simian virus is found among the bonobos in Africa, the human strain must have originated there too, remained in Africa and, had the “longest independent evolution” among al HTLV-II strains. It goes on and says that the other two strains reached America on human hosts[1], in two different “waves” [7].


We will look into this assertion later (see below: Conclusions)


But, and this is an interesting question: How did HTLV-2 reach America? And why are there two varieties (“a” and “b”) found in America? There is no evidence of HTLV-II in Asia, the route upheld by orthodox science as the one taken by modern humans “Out Of Africa”, across Asia and through Beringia into America. I will try to answer both below.


To clarify the picture, the following figure, (from [10]) shows the different HTLV-II strains:

  • HTLV-IIa (Amerindians) in Yellow
  • HTLV-IIb (Amerindians) in Green. IUDs not shaded; cosmopolitan distribution
  • HTLV-IIc (Amazonian strain) is shown in blue.

Pygmies are highlighted with an arrow, the “b” and “d” subtypes. And also an “a” type. Which I had not found mentioned in the bibliography.


HTLV-2 strains
From Fig 2 [10].

In America but not in Asia how can that be?


Assuming that the contemporary Asian descendants of the humans who peopled America had HTLV-II, a group of scientists [2] sampled 778 Siberians in 1993 at Tchoukotka and Sakhalin island and at other Northern Siberian populations. The sampling spanned a wide range of ethnic groups: Tchouktche, Nivkh, Evene, Yakoute, Eskimo, Russians, Dogen, Orok, Nganas, Evenke, Nenetse, and various other ethnic origins, surprisingly, not one of them was HTLV-II positive. A similar finding was reported by Neel et al. (1994) (sample n=473). [2]


Trying to explain this odd situation that defies the logic of the Beringian entry into America, the authors suggested several possible explanations:

  • the sample did not cover groups that had the virus.
  • A founder effect (population bottle neck that wiped out those carrying the original virus).
  • The extant population contains only a small proportion of the ancient mongoloid group that peopled America (and had the virus).
  • The virus disappeared due to a drop in transmission rate caused by (unexplained) cultural and / or environmental changes. [2]

The final and most likely probable cause given was that the current Siberians are not related to the group that peopled America and hence, don’t have the virus.[2]


In no other part of Asia has the HTLV-II virus been found with the exception of a single report of HTLV-IIa serological profiles in three Mongolian women, which was reported in a 1994 Annual Meeting of Virologists (W.W. Hall et al. 1994). [3]


However this finding was not printed later in any journal and, the author professor Hall, who is a world authority on HTLV-II, did not mention the issue again in the 18 years that have gone by since then.


Hall has recently studied HTLV infections in America and in Asia, his team was, of course, seeking the source of Amerindian HTLV, so knowing that Siberia showed no signs of the virus, “the researchers decided to go to Outer Mongolia” there “Hall's group found HTLV-I among remote peoples in Mongolia, but no HTLV-II. Not finding HTLV-II was significant, as it suggested an American origin [of the virus].” [4], a conclusion that is in contradiction with the Pygmy findings in Africa and the African origin of the virus.


Based on this evidence we can safely conclude that there is no clear proof available on the existence of HTLV-2-like viruses in modern Asian human and nonhuman primates.


So, how did the virus get to America without leaving any traces in modern Asian humans? Furthermore, HTLV-1 is present in Asia and also in America, so the human host who brought it into America managed to live on in Asia with it (in a future post we will take a look at HTLV-1 and the peopling of America). Why did HTLV-2 leave no traces in Asia?


Quick answer: it was not taken there by modern humans but by other now extinct hominids More below, see Conclusions.


It is a matter of Time and divergence


When comparing the different strains of virus, scientists look at the differences (nucleotidic divergence) and take it as an indication of how long they have evolved separately. The more differences, the longer they have been apart.


The divergence between HTLV-IIa and HTLV-IIb is about 4.8%. What can this tell us?


Since the internal divergence of HTLV-IIb between the different Amerindian groups varies from 0 to 0.4%, on an average 0.2%, and these people have been isolated for milennia, a very simple and straightforward calculation (and a very approximate one also) would allow us to calculate that the “a” and “b” strains have been apart for about (4.8/0.2 = 24) twenty four times longer. [7]


Of course, evolution rate may not be constant as time passes (accelerates, decelarates, stops and starts), it may vary along the nucelotide, quicker in some areas, slower in others. This is reflected in the range given for the evolutionary rate in the bibliography: evolutionary rate is estimated at 0.1 to 1% per 1000 years (a tenfold difference). Furthermore, it seems that it may even be lower in populations with predominantly vertical (mother-child) transmission such as Amerindians [8]


Virologists test their divergence estimates against “established” mileposts defined by anthropologists, take this example (from [11]):


The relaxed molecular clock was calibrated with two independent molecular calibration points; 12,000 – 30,000 ya as confidence intervals for the origin of HTLV-2 as it migrated out of Africa and Asia and into the Americas via the Bering land bridge and 40,000 – 60,000 ya as confidence intervals for the origin of HTLV-1 in Melanesia as it became populated with people from Asia... The PTLV evolutionary rate assuming the global molecular clock model was estimated by using the divergence time of 40,000 – 60,000 years ago (ya) for the Melanesian HTLV-1 lineage (HTLV-1mel) and 12,000–30,000 ya for the most recent common ancestor of HTLV-2a/HTLV-2b native American strains..."[11]


But what if the clocks are based on incorrect temporal events? Say it was a pre-sapiens hominid who brought the HTLV-II into America long before the 12-30 Kya date? Or if HTLV-1 reached Melanesia in the blood of a H. erectus 1.8 million years ago?


Below are two different examples of the outcome of these divergence estimates and the dates of course differ


1. Divergence of the different HTLV and STLV virus [6]


This paper includes a Figure, shown below, in which the PTLV-1 and PTLV-3 human and simian viruses are intermingled, but the HTLV-2 and STLV-2 have lineages that are clearly separated from each other. [6] Does this reflect that there is no recurrent or repeated cross-infections between species in HTLV-2?


Note the split dates. The split between PTLV-3 and the other two happened between 947 and 632 Kya. HTLV-2 broke off from the simian STLV-2 some 192- 287 Kya, and it was about 579 to 867 Kya that PTLV-1 and PTLV-2 split apart.[6]


HLTV-2 divergence times
PTLV evolution times Fig. 8.2 from [6].

HTLV2 divergence
HTLV-II Divergence Tree. Fig 5 from [11].

2. Divergence of the different HTLV and STLV virus [13].


This paper includes several figures all similar (though the exact dates differed slightly) and we have taken one, shown above which depicts the different HTLV and STLV variants and their evolution. The branch lengths are proportional to “median divergence times” in years and the scale at the bottom shows 100,000 years.


It estimates the following dates in years BP: PTLV-4 split from PTLV-2 happened between 49,800 and 378,000 years ago. The PTLV-1 : 54,250 - 75,100 years, PTLV-2: 75,200 -128,600 years, and PTLV-3: 40,850 - 71,700 years.


The dates of examples 1 and 2 differ considerably, so it makes me wonder how reliable are these “clocks” and divergence times. Furthermore, since they are taking the entry date of modern humans into America (12- 30 Kya) as a benchmark to calibrate their clocks, I am even more doubtful about their reliability. As we will see below there is some discrepancy among specilists regarding the divergence dates.


Conclusions, Discussion and possible explanations


Having read all the facts and seen all the data we have to explain the following:


  • A virus strain, HTLV-II with three subtypes “a”, “b” and “c” found basically in America (North and South)
  • The same virus HTLV-II subtype “b” found among Gabonese and Bakola Pygmies.
  • Another unique African strain “d” , apparently the most divergent and therefore ancient, among another group of Pygmies, the Efe or Bambuti.
  • No virus (we exclude the recent dispersal by IUDs) anywhere else in the whole world.
  • Similar virus in D.R. of Congo Bonobo simians in Africa suggesting an African origin.

First lets take a look at the African “b” Subtype “outliers” the Gabonese and the Bakola Pygmies.


Why are the IIb subtypes from America and the Pygmies so similar?


Long residence in isolated populations such as the Amerindians and the Pygmies should provoke a high level of genetic drift. But, the divergence within IDUs is higher than the one found among the reservoir populations! And “tree branch length of nearly all viral strains within the major groups are short, indicating only a few genetic differences are unique to each strain irrespective of origin.” [13].


This could be explained by “a recent origin of modern day HTLV-II with repeated episodes of intercontinental dissemination” [13] But this option can be discarded based on the unique diversity of subtype IId and STLV-II


But the extreme similarity between strains fouond in Colombia and Cameroon; and Chile and Gabon, show such a small divergence that [13] ”based on the rates of change from IVDU (Salemi et al. 1998a), yields a recent divergence time of 100–400 years ago for the transcontinental strains.”[13] (Below is a link to Salemi’s paper).


In an attempt to circumvent this contradiction some have proposed that coevolution between host and virus in isolated communities is different to the mutation rate of the virus when it enters a new host population such as IDUs (where it evolves faster). Thus mutation rate may be “mutation rate may be orders of magnitude different”[13] (slower) among Amerindians.


I think that the answer is much more simple and straightforward:


The Gabonese and Bakola HTLV-IIb source: Brazil


If we accept Salemi’s time frame of 100 – 500 years BP as the age of HTLV-IIb subtype, and ask ourselves if there is any link between Equatorial Africa and America through which the virus could have moved during that window, we can immediately answer: yes, there was a link: the Atlantic slave trade.


Of the 11 million Africans that were captured, enslaved and ferried across the Atlantic, about 3 to 5 million went to Brazil. This country held the largest slave population in the whole world. These Africans came from the Portuguese setlements in Africa: Mozambique, Angola, Cabinda, Guina Bissau, Cape Vert and other sites along the Gulf of Guinea. Gabon and Cameroon were providers of slaves too.


It is highly probable that the HTLV-IIb strain detected in Gabon, and virtually identical to the Amerindian strains may came from America: Gabon was a source of slaves for the Americas and a coastal settlement set up for this purpose in ths sixteenth century, taking slaves from deep inland and loading them on slave ships. Paradoxically it ended up as Libreville (Freetown), the current capital of Gabon, which housed freed slaves captured by the French navy in the 1840s and grew to become a settlement with freed slaves.[15]


The crew of slave ships could have easily become infected with Amerindian HTLV-II from prostitutes at the South American Ports (Brazil or elsewhere in Spanish America) where they unloaded their human cargo, and taken the virus back with them to Africa on their voyages to pick up more slaves or to trade with goods sent from Brazil to Africa. Similar horizontal transmission from sailors to African prostitutes at the Eastern African slave loading posts would have ensured transmission from one side to the other side of the Atlantic Ocean.


Could the infection have spread to the isolated Bakola Pygmies?


The Bakola Pygmies were not so isolated


The eastern Bakola Pygmies have interacted with the Bantu people along the coastal areas of Congo, Cameroon and Gabon for hundreds of years: ”In fact, unilateral marriage practicesin which Kwassio [ Bantu] men marry Bakola [Pygmy] women, and the children born from suchmarriage, have provided an opportunity for a spatial and temporal developmentof a long standing Bakola /Ngoumba relationship”. [16]


Marriage and the carnal relations it entails are a sure way for horizontal transmission of HTLV-II from coastal groups in touch with slave ship crews and inland Pygmy populations.


Wrap up: Therefore it is plausible therefore that American HTLV-II b subtype virus entred Gabon via slave ship crews and that prostitues in both America and Africa acted as infection routes: in America from Amerindians to sailors and in Africa from sailors to local population. These in turn through marriage infected the Bakola. The recent temporal window suggested for this virus subtype and the homogeinity among the viral strains in disparate locations are thus explained.


The Bambuti Pygmy “d” strain and bonobos


The “d” subtype is very interesting and there are two possible scenarios that can explain its great divergence from the Amerindian strains:


1. Recent origin: “it cannot be excluded that this yet unique HTLV-2 D strain could have been quite recently acquired from a a simian host, implying that its divergence does not reflect a long standing presence in the human host.”[12]. The text cited, speaks for itself. In other words, the apes infected the Bambuti pygmies recently


2. Ancient origin: it could be equally likely that the strain is very old among humans, as can be seen by its great divergence and is closer to the STLV-2 strains. This indicates an ancient origin in Africa.


What cannot be defined however is “whether the virus originated in the bonobo chimps and then infected humans, or if a common ancestor infected both humans and P. paniscus early within type II evolution”.[13]


This is interesting and we will look into it again below.


Why is it not found in Asia?


Quick answer: it was not taken there by modern humans but by other now extinct hominids. Lets elaborate on this:


The classic scenario for the dispersal of HTLV-II is the following: [13]


...type II viruses diverged from a common ancestor with other HTLV/STLV in Africa, and HTLV-II subsequently formed a minimum of three major lineages (IIa, IIb, IId) within Africa. With ancestral human migration events, subtypes IIa and IIb were carried into the New World and segregated among ethnic Amerindian tribes... [13]


This scenario requires two separate waves of ancestral humans taking the two different “a” and “b” varieties of HTLV-2 to America. Which, in my opinion is very complicated, especially since not one member of these waves remained in Asia with the HTLV-II virus in them.


The simple explanation is the following: PTLV-II originated in Africa and infected the bonobos and a group of hominids, perhaps Homo habilis, that preyed on them and got infected. The STLV-II adapted to these hominids and produced an ancestral HTLV strain.


Some of the infected H. habilis moved out of Africa and into Asia, taking the “proto IIC” (yes, “c”) with them. Others remained in Africa, and their HTLV-II would later evolve into the “IId” which died out elsewhere, but survived to infect the Bambuti humans. It is probable that H. habilis was preyed on by groups of H. erectus or other hominds, and that the last relict non “sapiens” hominids infected the Bambutis.


H. habilis bypassed Southern Asia and its simian inhabitants, which is why the Asian apes are not infected. They chose to live in the Caucasus. Their “Georgian” descendants must have pushed on, through an empty Siberia, across Beringia, into America, following their big megafaunal game. The few that remained behind disappeared without a trace and did not infect the hominids that would follow their steps. Or perhaps did, infecting Neanderthals, but since they passed away too, their HTLV-II is lost.


H. erectus who followed them later, chose a southern route (India, Indonesia, China and perhaps Australia), but they were not infected and did not take the virus with them. Perhaps they had HTLV-I, but we will look into that in another post.

Modern humans when they left Africa and entered Asia, were also free of HTLV-II, it remained in a backwater of Congo, tied up in the Bambuti Pygmies.


Modern humans lived in an HTLV-II free Asia!. That is why it has not been detected there.


The Georgians into America across Beringia 1.5 million years ago is a very ancient event, and it surely puts the “genetic clock” used to calculate divergence and evolution of viral strains in another setting. The dates divergence are very likely unreliable.


Highlight. There were no humans in Asia when H. habilis took a proto HTLV-IIa across Siberia and into America.


Cross-species transmission and the PTLV-II anomaly


STLV-1 strains have repeatedly infected human beings and this is the origin of the different subtypes of HTLV-1 found in Africa. The same can be said for the origin of HTLV-3. [11] The source of infection: hunting and eating monkeys, a horizontal prey-primate hunter transmission of a zoonotic infection, and intimate contact with the prey’s body fluids. [11]


Evidence of this is the more than 15 species of Asian and African apes are infected with HTLV-I, and 15 African ones with HTLV-III, your would expect a similar situation with HTLV-II, but no, it has not been detected in any wild apes in Africa, and has only been isolated in pygmy chimpanzees or bonobos (Pan pansicus) housed at the Yerkes National Primate Research Center in the USA but originally captured in the Democratic Republic of Congo [6] (where evidence of STLV-2 among wild bonobos has recently been sugested).[17]


So, beyond the bonobos, no STLV-II virus is found in Africa, this is very different to PTLV-I and III. Why?


The surprising thing is that STILV-II has been found in New World spider monkeys (Atles fusciceps) from Panama. [5] The authors of the paper that discoverd this, cautiously write: “There are several lines of evidence to suggest that the STLV-II isolate described here is a new simian retrovirus closely related to but distinct from HTLV-II...”. They continue and speculate: “New fossil evidence suggests that the time of origin of simian primates may be pushed back into the Paleocene period, which means that direct migration of simians between Africa and South America is more likely...”.


And finally: “HTLV-II infection may be endemic in certain New World aboriginal populations [...] since these Indian tribes are relatively isolated [the infection] may have arisen from close contact with primates....[5]


In other words: Ancient African apes had STLV-II, and that long ago,when South America and Africa were part of a Supercontinent, the virus was present in both groups. Later it evolved and infected Amerindian humans with HTLV-II. This is very unlikely (the similarity between African and American PTLV-II suggests one unique origin and dispersal out of Africa into America in more recent times than the Paleocene.


The more likely situation is that H. habilis entered America (which was free of PTLV-II), and that they infected the spider monkeys.


The Amazonian “IIc” anomaly: it is an ancient strain


We have mentioned at the beginning of this post that HTLV-IIc is included as a subcluster of IIa. What is interesting about “IIc” is that it has a very unusual feature, a protein encoded by its Tax gene (the virus contains this and other genes that modulate viral expression and play an important role in its pathogenesis) is similar to the one encoded by HTLV-IIb but is longer than that of type IIa. On the other hand its env (another gene) and LTR (gene expression control center) strongly resembles type IIa.


A possibility is that the long Tax gene is ancestral and was lost by the IIa subtype but was kept by IIc. Interestingly, the other “ancient” lineages of PTLV-II, the STLV-II and the “IId” variety also have long Tax genes. [13]


Point to remember The Amazonian “IIc” must therefore be older than “IIa” (which surely arose from it), and also older than “IIb”. It is probably as ancient as the “IId” found among the Bambuti Pygmies.


This is logical if you assume that H. habilis brought the proto HTLV-IIC with him into America. It evolved there isolated from the other “d” strain. And originated the “a” and “b” strains, the latter would then infect the newcomer H. sapiens when they reached America, and through them would later return to Africa in the blood of the slave ship crews to infect Gabonese and Bakola Pygmies.


Closing Comments


This has been a very long post, though I sincerely hope it was not a boring one!


What I tried to point out were two things: one, that a hominid other than us, modern humans could have brought HTLV-II into America long before the accepted date of entry (beyond 30 Kya) of humans into the New World. And two, that scientists take this date (30 Kya) as written in stone and calibrate their genetic clocks as well as build complicated theories to avoid going against it other, unconventional yet much more simple explanations such as the one mentioned above (early peopling of America by non-sapiens hominids.


Comments, suggestions, criticism is welcome


Sources


[1] Anne-Mieke Vandamme, et al. (1988). African Origin of Human T-Lymphotropic Virus Type 2 (HTLV-2) Supported by a Potential New HTLV-2d Subtype in Congolese Bambuti Efe Pygmies. J. Virol. May 1998 vol. 72 no. 54327-4340


[2] Gressain, Antoine, et al. (1996). Serological Evidence of HTLV-I But Not HTLV-II Infection in Ethnic Groups of Northern and Eastern Siberia. Journal of Acquired Immune Deficiency Syndromes & Human Retrovirology: 1 April 1996 - Volume 11 - Issue 4 - pp 413,414. Letters to the Editor.


[3]Hall, W. W., S. W. Zhu, P. Horal, Y. Furuta, G. Zagaany, and A. Vahlne., (1994). HTLV-II infection in Mongolia. Abstracts of the Annual Meeting of the Laboratory of Tumor Cell Biology, National Cancer Institute, Bethesda,Md.


[4] Clarie O’ Connell, (2007). UCD virus hunter travels the world seeking answers. Science Spin - January 2007


[5] Chen, Y. M. A., Y. J. Jang, P. J. Kanki, Q. C. Yu, J. J. Wang, R. J. Montali, K. P. Samuel, and T. S. Papas, (1994).Isolation and characterization of simian T-cell leukemia virus type II from New World monkeys. J. Virol. 68:1149–1157


[6] Alexander Voedvodin, Preston Marx, (2009). Simian Virology, Wiley-Blackwell. pp. 197.


[7] Antoine Gessain et al. (1995). Isolation and molecular characterization of a human T-cell lymphotropic virus type II (HTLV-II), subtype B, from a healthy Pygmy living in a remote area of Cameroon: An ancient origin for HTLV-II in Africa. Proc. Natl. Acad. Sci. USA. Vol. 92, pp. 4041-4045, April 1995.


[8] Angus G. Dalgleish. HIV and the New World Viruses pp 308+


[9] Philippe Mauclère (2011). HTLV-2B Strains, Similar to Those Found in Several Amerindian Tribes, Are Endemic in Central African Bakola Pygmies. Journal of Infectious Diseases. Published on behalf of Infectious Diseases Society of America. Volume 203, issue 9, pages 1316-1323


[10] Ethienne Lobato dos Santos et al., (2009). Molecular characterization of HTLV-1/2 among blood donors in Belém, State of Pará: first description of HTLV-2b subtype in the Amazon region Rev. Soc. Bras. Med. Trop. vol.42 no.3 Uberaba May/June 2009


[11] William M Switzer, et al., (2009). Ancient, independent evolution and distinct molecular features of the novel human T-lymphotropic virus type 4. Retrovirology 2009, 6:9 doi:10.1186/1742-4690-6-9.


[12] Thomas Leitner, Ed. The Molecular Epidemiology of Human Viruses. Chapter 7. Gessain A, Meertens L and Mahieux R. Molecular Epidemiology of Human T cell leukemia / lymohoma viruses Type 1 and Type 2...”. pp. 149.


[13]Jill Pecon Slattery, Genoveffa Franchini, and Antoine Gessain, (1999). Genomic Evolution, Patterns of Global Dissemination, and Interspecies Transmission of Human and Simian T-cell Leukemia/Lymphotropic Viruses. Genome Res. 1999. 9: 525-540


[14] Salemi M., Vandamme A.-M., Gradozzi C., Van Laethem K., Cattaneo E., Taylor G., Casoli C., Goubau P., Desmyter J., Bertazzoni U.(1998a) Evolutionary rate and genetic heterogeneity of human t-cell lymphotropic virus type II using isolates from European injecting drug users. J. Mol. Evol. 46:602–611.


[15] P. Hinks, John R. McKivigan,R. Owen Williams. Encyclopedia of Antislavery and Abolition, Volumen 2. pp. 432,


[16] Ngima Mawounga. (2001), The relationship between the Bakola and the Bantu poples of the coastal regions of Cameroon ...". Study Monographs, Suppl.26: 209-235, March 2001 209. pp. 214



Patagonian Monsters - Cryptozoology, Myths & legends in Patagonia Copyright 2009-2012 by Austin Whittall © 

Wednesday, May 2, 2012

The South African "out of Africa" route


My last posts have dealt with a Brazilian geologist and Archaeologist, Maria Beltrão. She has proposed that our distant relative, the H. erectus reached America over 1 million years ago. Below I post about her and the route she proposes for this migration of H. erectus into America.


Beltrão writes about herself


Beltrão points out in an article [1] that hominids have been living in Asia at least since 1.8 million years ago (in Indonesia, central China and Pakistan), and also in Georgia, (the remains are probably anHomo habilis), with this in mind, she adds:


If over 5 million years ago, animals crossed from Asia to America and vice versa, man, being a hunter why did he say “no” to America and did not follow his prey during the last 2 or 4 million years?”[1]


As a geologist, she has sought out sites whose surface is sealed off, either with marl as at Toca da Esperança, or with lava as at Itaboraí, to ensure undisturbed layers.


The South African gateway


She proposed (together with Paepe, 1978 - I have not been able to find the paper / article) a migration from South Africa to South America during the glacial period, crossing the ice pack.


This is an interesting “Out of Africa” route, it must go south, cross the sea between South Africa and the ice pack surrounding the Antarctic, then go along the pack’s coastline till it reaches America and from there, back up, into Patagonia. A long and risky journey that combines sailing and trekking along the ice pack.


I have posted about a possible route via the Antarctic into South America, but from the West, from Australia, New Zealand and Tasmania. An equally difficult and longer route than the South African one.


To get an idea of what would have to be trekked – sailed – navigated, I combined two different maps that depict the coastline of Southern Africa and the Southern part of South America during the Last Glacial Maximum (LGM), when most of the water was stashed away in the form of gigantic ice sheets covering the Northern Hemisphere, Antarctica and parts of South America and New Zealand. The sea level dropped and exposed parts of the continental shelves of both continents (shaded in light green). The sources of the maps are [2] and [3]. I also added another map taken from[4], and adapted from its FIG. 5. Which shows the ice thickness in meters (filled color contours) winter during the LGM. South Africa not included in the original map, was added by me. The red arrow shows the possible land and sea route that could be used to reach America from Africa.


I am well aware that our friend, the H. erectus would have reached America long before the last Ice Age and its LGM, yet even so, I chose the LGM coastline for two reasons: one, that all previous glaciations would have provoked a similar drop in sea level and, two, that I could not find any data on previous glaciation coastlines.


Below are the maps:


LGM coastline South Africa South America

Out of Africa erectus route
Maps showing Antarctic route from South Africa to America. LGM coastline given as a reference. Adapted by A. Whittall from [2][3] and [4]

I believe that the circumpolar current flows from West to East and therefore would hinder a direct navigation across the South Atlantic. But I must check to see if this is valid for glacial periods.


Sources

[1] Maria Beltrão, (2008). Depoimentos de Arqueólogos pioneiros: Maria Beltrão, ISSN 1807-1783, atualizado em 02 de abril de 2008. História e-História


[2] C.Leigh Broadhursta et al, (2002). Brain-specific lipids from marine, lacustrine, or terrestrial food resources: potential impact on early African Homo sapiens . Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology. Volume 131, Issue 4, April 2002, Pages 653–673


[3] L. Miotti and M.C. Salemme, (2003), When Patagonia was colonized: people mobility at high latitudes during Pleistocene/Holocene transition. Quaternary International. Volumes 109–110, 2003, Pages 95–111


[4] Otto-Bliesner, et al, (2006). Last Glacial Maximum and Holocene Climate in CCSM3 J. Climate, 19, 2526–2544. doi: http://dx.doi.org/10.1175/JCLI3748.1


Patagonian Monsters - Cryptozoology, Myths & legends in Patagonia Copyright 2009-2012 by Austin Whittall © 

Friday, April 27, 2012

Homo erectus and Neanderthals in America: another track


I read an online article[1] that prompted some interesting thoughts, its title: “Rise of Humans 2 Million Years Ago Doomed Large Carnivores”. The article is about a study presented a week ago at a workshop on climate change and human evolution at Columbia University's Lamont-Doherty Earth Observatory.


It seems that when our more distant relatives acquired the ability to make stone tools some 2 million years ago, our diet changed and this led to the demise of most carnivore species in Eastern Africa (from 29 species of large meat-eaters weighing more than 21.5 kg that existed before our appearance, only 6 survive nowadays).


Lars Werdlin has studied the matter and ruled out climate as a factor of disruption since only the large carnivores were hit, not the tinier ones. Climate would hit all alike. Furthermore, the decline in carnivore numbers began just when hominins started making stone tools and shifted their diet to include more meat, becoming less omnivorous. They were carrion eaters not hunters, but they successfully stole the kills of meat eating mammals, starving them.


Werdelin studied a time period between 3.5 and 1. 5 Mya (Million years ago) and found that not only did carnivores die out, but also omnivores that scavanged such as civets were gone too. They were in direct competition with the hominin carcass scavengers. Only “hypercarnivores” survived.


Werdelin (with Lewis) had already written about this in 2005 [2], and concluded: “ The extinction rate peaks at around 3.0 Mya after which it falls slightly, remaining nearly constant until 1.8 Mya, after which it increases considerably. The data support the hypothesis that the modern carnivoran guild of eastern Africa originated relatively recently, mostly within the last million years.”[2]. So we have extinctions in two distinct pulses, one about 1.8 Mya (when H. erectus made his Acheulean tools) which continues to this day and an older one 3 Mya.


Not all scientists agree with this, and point out that the correlation between the two events (rise of hominins and decline of carnivores) is not too strong.


American mammal extinctions and pre-sapiens hominids


What is most interesting is that the article is not talking about us, Homo sapiens it actually refers to our more distant Homo erectus ancestors, this made me wonder if a smiliar pattern could be traced in America before the arrival date of modern humans. If so, we could suppose that H. erectus or if later, the Neanderthals, were in America during an early period, devastating American mammals.


Since this is my first foray into this field, I will back up all my guesses with bibliography (see “Sources” below). I first decided to check the temporal boundaries of the different “Ages” (Land mammal ages or LMAs) mentioned in the studies. To my surprise these are, (allow me the pun) not set in stone. The cutoff of each LMA is variable. Nevertheless, below is the timeline we will work with and the names of the most important LMAs:


  • Uquian 2.5 to 1.5[5] or 1.2[3] Mya
  • Ensenadan 1.5 or 1.2 to 0.5[5] or 0.8[3] Mya
  • Lujanian 0.5 or 0.8 to 0.01 Mya

As you will see below, these in turn are subdivided into other “shorter” periods.

If we were to expect a pre-sapiens “into America” scenario, it would have to happen between 1.8 and 0.2 Mya, in other words the late Uquian, the Ensenadan or the early Lujanian. In Table 1, below (adapted from sources [3] and [4] ), I have shaded the time frame in red.


The hard facts


mammal extinctions South America
Table 1 Based on [3] and [4].

Table 1 shows us that genra have become extinct long before hominids even got out of Africa. It shows us that the rate of extinction is variable and that recently the “big” animals have been hit harder than the smaller ones (Lujanian vs. Ensenadan or Uquian), but, long ago, during the Chapadmalean, small and big alike disappeared and in large quantities. This probably reflects some other kind of event, maybe climatic or a combination of events that hit all-sized animals.


The event that marked the end of the Chapadmalean and start of the Uquian was the “Great American Biotic Interchange” about 2.5 Mya. It seems,[6] that: Large body mass and not food-niche was the main cause of extinction, since most herbivores were big, body mass caused them to go too. This paper’s appendix shows that few omnivores were hit.


Apparently this “Great American Biotic Interchange”, took place gradually: it was not a sudden invasion that wiped out the local endemic mammals [7].


Modern Humans and their impact in America


There is now doubt that no other contienent lost as many mammals in the Late Pleistocene as South America. [3] There is a clear spike in extinctions about 10,000 years ago during the Quaternary, and these are explained by two mainstream theories:[8]


  • Climate – Ecological changes. Pleistocene plants were more diverse and their growing season longer. Climate change (Pleistocene glaciations) wiped out many species putting stress on specialized herbivoeres and their carnivore predators.
  • Human hunting. Or “overkill” theory: humans irrupted into an isolated habitat with animals who could not recognize them as predators and adopt defensive attitudes –this explains why African megafauna survived: they co-evolved with humans and learned to adopt protective behaviours. And several authors (Patterson and Pascual, Webb and Marshall) uphold this theory.[3]

Regarding this overkill theory it is perhaps overblown. The extended use of fire and its destructive impact on the environement impacted negatively on local mammal species, perhaps even more than effective stone spears. Also: [4]


The archeological evidence indicates that the overhunting was focused on guanacos and deer, which, paradoxically, are those mammals that survived the extinction. The scarcity or infrequent occurrence of megammamals in archeological sites more likely implies that these mammals were less abundant in the area, not that they were ignored or inaccessible to humans
...
The extinction appears to have been more concentrated in taxa of South American origin. However, this is mainly apparent because many of the large mammals were xenarthrans (and litopterns and notoungulates). [4]


H. erectus or Neanderthal in America, what do extinctions tell us?


Its time to look at the possible impact our more distant relatives may have had in America. So lets take a look at mammal extinctions during the last four million years.


Below is Table 2 adapted from Fig. 6 in [9], which I colored to show when mammals were undegoing periods of growth (green) or extinction (red). Roughly, the Great Exchange took place between “C” and “B” (chapadmalean – Barrancalobean periods). During this period, extinctions are rife.


mammal extinctions Pleistocene America
Table 2 Based on [9].

Another very similar Table, shown below (Table 3) is adapted from Alberdi et al (1993), who, show the extinction rate in South America during this period (Fig. 2 of [10]), and compare local endemic species with those coming from the Northern Hemisphere during the Great Exchange


This Table 3 replicates the trends of Table 2, (but here you get a time scale and not only the names of the different periods). The colors, once again represent extinctions (red) or growth (green):


extinctions Pleistocene America
Table 3 Based on [10].

Table 3 clearly shows that for autochthonous species, there are two periods of growth (in green), one ending about 4 Mya and the other between 1.2 and 0.3 Mya. Each growth period is followed by a period of decline, painted red, (4 – 1.2 Mya and 0.3 Mya until now). Newcomers from the north, are always increasing but, (gray shaded) in Recent times suffered a loss (when modern humans came on scene).


So we do have periods of extinction predating the arrival of modern humans in America, what about other hominids?


Probable indicators of ancient hominds in America


The time window for ancient hominids to enter America depends on when they left Africa. If , as I posted previously (First Asians were not Homo erectus), the “primitive” H. habilis left Africa and gave rise to the Damanisi people or Homo georgicus about 1.75 M years ago, they or the Damanisians could have arrived in America shortly after (i.e. 1.6 Mya). The same could apply for H. erectus whose remains in Asia date back to about 1.7 Mya.


What impact could they have had on the South American mammalian fauna? What do Tables 2 and 3 tell us?


Any impact they may have had was limited: The autochthonous species were in the midst of a long period of extinctions (probably due to the “Great Exchange”), whose pace was slowing down (less extinctions).

The hypothetical arrival of H. erectus 1.6 Mya would fall towards the end of this period, during the Vorohuan and Sanandresian periods (5+6 in Table 3 and V-S in Table 2). At that time there was an swift change and the local mammalians went into a period where more taxa was appearing than going extinct.


This period of growth is painted in green in both Table 2 and 3, and happened during the Ensenadan (7 in Table 3 and E in Table 2), Table 1 also shows this trend, as it indicates that extinction rate dropped to a puny 8% during the Ensenadan Age

Lack of extinctions between 1.2 and 0.3 Mya indicates lack of human predation (if we buy the theory that humans are the cause of extinction).


Could this indicate that, if they ever reached America 1.6 Mya, the H. erectus became extinct here about 1.2 Mya? Or were they here in such small numbers that their impact was minimal and all of the extinctions are due to natural causes?

The Neanderthal option. The second period of increase in extinctions begins about 300 kya (8 in Table 3 and L in Table 2). This is long before the appearance of modern H. sapiens in Africa, let alone America. So it could indicate that if these extinctions were due to human action, then the culprit were the Neanderthals, who had arrived in America and were using their refined hunting skills on the local mammalians.


Closing comments


Modern human activity impacts negatively on the environment and that is an undeniable fact. However the impact that a few thousand primitive pre-sapiens men armed with stone spears and fire could have on the global mammalian fauna is something that, in my opinion has to be proven.


What data can we glean from the extinction of Late Pleistocene fauna? The paucity of remains, the large “slices” (0.5 My) into which this period is split up in the articles that deal with this subject, and the differing opinions among experts in the field, leave plenty of room to doubt if we can identify among the “natural” noise, the signal of a band of H. erectus or Neanderthals killing off American mammals.


Sources


[1] Kate Wong , April 25, 2012, Rise of Humans 2 Million Years Ago Doomed Large Carnivores. Observations. Scientific American.

[2] Werdelin, L, Lewis, ME, 2005). Plio-Pleistocene Carnivora of eastern Africa: species richness and turnover patterns. Journal Zoological Journal of the Linnean Society, vol 144:2, 121-144. 06/2012.

[3] Paul S. Martin Quaternary Extinctions. A Prehistoric Revolution pp. 370.

[4] Cione, Alberto, Tonni, Eduardo and Soibelzon Leopoldo. Did Humans cause the Late Pleistocene – Early Holocene Mammalian Extinctions in South America in a Context of Shrinking Open Areas? Chap. 7 of Gary Haynes (Ed.) American Megafaunal Extinctions at the End of the Pleistocene. (pp. 125+).

[5] R. D. E. Mac. Phee. Extinctions in Near Time: Causes, Contexts, and Consequences pp. 37

[6] Lessa, Enrique and Fariña, Richard, (1996). Reassessment of Extinction Patterns Among the Late Pleistocene Mammals of South America. Paleontology, Vol. 39, Part 3. Pp-651-662.

[7] Aguirre, Emiliano; Vangengeim, Eleanora, Morales, Jorge, Sotnikova, Marina and Zazhigin, Vladimir. Plio-Pleisotcene mammal faunas: an overview .From: Van Couvering, John, The Pleistocene Boundary and the Beginning of the Quaternary Chap. 9. Pp.123 and 124

[8] Sánchez Begoña, Prado José Luis, Alberdi María Teresa. Ancient feeding, ecology and extinction of Pleistocene horses from the Pampean Region, Argentina. Ameghiniana [revista en la Internet]. 2006 Jun [citado 2012 Abr 27] ; 43(2): 427-436.

[9] Tonni, Eduardo and Noriega, Jorge, (1998). Los Cóndores (Ciconiiformes, Vulturidae) de la región Pampeana de la Argentina durante el Cenozoico Tardío: Distribución, Interacciones y Extinciones Ameghiniana, Rev. Asoc. Paleontol. Argent. 35 (2): 141-150. Buenos Aires,

15.07.1998.

[10] M. T. Alberdi, F. Bonandonna, E. Cerdeño, A. Longinelli., J. Prado, B. Sanchez and E. Tonni, (1993). Paleoclimatic and paleobiological correlations by mammal faunas from Southern America and SW Europe. Proceedings of the 1st. R.C.A.N.S. Congress, Lisboa, Oct. 1992. Ciencias da Terra (UNL), No.12 pp 143-149.


Patagonian Monsters - Cryptozoology, Myths & legends in Patagonia Copyright 2009-2012 by Austin Whittall © 

Monday, April 23, 2012

The "Savage" Man of Venezuela


The snow of the Andes regions run down its eastern slopes and joining the rainfall of the Equatorial region, feeds the great rivers of South America: the Amazon, the Paraná and the Orinoco. This area, a vast portion of the South American continent is covered in parts by the Amazon rain forest, and in others by immense wetlands, savannas or mountain ranges. It is the ideal place for a relict race of humans to hold out against modern men.


In my recent series of posts I have covered several of these hominids that have been reported since the first Europeans set foot in the area. They are deeply entrenched in the native’s lore and as such may have been based on fact, their “wild men” or “hairy jungle men” may be in fact their distorted view on our ancestors (H. erectus, the Neanderthals or even some other hominid race that moved out of the Old World and in to America).


My post on the Corupira led me to a source mentioning “savage men” in Venezuela. Today I will write about them, and, as usual go to the oldest known sources and not just copy and paste rehashed information of unknown origin.


The Wild man according to Gilij


Filipo Salvadore Gilij was an Italian jesuit priest (1721-1789), who lived in what is now Venezuela at missions set up along the Orinoco River. He lived in touch with the natives and learned their languages. He returned to Italy when Spain expelled the Jesuits from its American territories in 1767 and wrote an “Essay on American History...” which, in several volumes, deals with the natural and human history of the areas he visited.


In particular, he described the “Savage” or “Wild man” of the Orinoco. Below is the Italian language text of the part of his work that deals with this creature: [1]



 

A rough translation is the following:


In my history I said I had not met any Indians who told me that they had seen the “Savage” with their own eyes. But what did not happen over many years, happened recently when another missionary to whom I owe the following account.
At the Mission at the Falls of Aturi a child went into the jungle and with great pain to his relatives, did not return and though they searched for him. After 10 days the child reappeared, more dead than alive. The missionary called him in, gave him a substantial broth and heard the Indian boy’s account: The Savage took him by his hand and rescued him, took him to a cave in where he had food. On the the tenth day the food stash finished so the Savage went out to get more food, this gave Diego (the child’s name – James in English), the chance to return home. The boy was about ten years old. He said he was never left alone by the Wild man and that it was single, but gave no other details. He ignored or could not say what food the Savage ate. But being a wild animal, the abbot says a type of ape, I would believe it was fruit. But I cannot add more.
[1]


These Aturi Falls, or, as they are known in Spanish, “Raudal Ature” or Ature Rapids are located on the border between Colombia and Venezuela, close to the town of Puerto Ayacucho, Venezuela as can be seen in the map below:


mapa raudal Ature
Map showing the location of Ature Falls, home of the “Savage”.
Copyright © 2012 by Austin Whittall

Humbold’s account (1800)


German explorer and scientist, Alexander Von Humboldt,(1769-1859) wrote about this creature. Between 1799 and 1801 he travelled around parts of Southern, Central and North America. He visited the Viceroyalty of Nueva Granada (current Colombia and Venezuela) in 1799-1800 and again in 1801.


It was during his first trip that he explored the upper Orinoco River reaching San Carlos in May 1800. It was during this trip that he passed by the Ature Rapids and wrote about the Savage. Below are his comments (full English language text can be seen following the link at [1] in our Sources):


It was among the cataracts that we began to hear of the hairy man of the woods called salvaje [Savage is the translation] that carries off women constructs huts and sometimes eats human flesh The Tamanacks call it achi and the Maypures vasitri or great devil The natives and the missionaries have no doubt of the existence of this anthropomorphous monkey which they singularly dread.
Father Gilij gravely relates the history of a lady in the town of San Carlos who much praised the gentle character and attentions of the man of the woods She lived several years with one in great domestic harmony and only requested some hunters to take her back because she was tired she and her children a little hairy also of living far from the church and the sacraments
[2]


Humboldt is skeptical as can be seen in the paragraphs that follow. Where he calls the story a “fable which the missionaries the European planters and the negroes of Africa have no doubt embellished with many features taken from the description of the manners of the ourang outang the gibbon the jocko or chimpanzee and the pongo” [2]


He noted that this “belief is particularly prevalent among the people such are the banks of the Upper Oroonoko [sic] the valley of Upar near the lake of Maracaybo the mountains of Santa Martha and of Merida the provinces of Quixos and the banks of the Amazon near Tomependa [2] and that if after centuries of Spanish occupation nobody had ever hunted one of these great monkeys. He suggested the following reasonable explanations:


  • The capuchin monkey with its human-like appearance originated the myth.
  • A bear. He writes: "It may be also and this opinion appears to me the most probable that the man of the woods was one of those large bears the footsteps of which resemble those of a man and which is believed in every country to attack women" [2]

Humboldt concludes with a piece of advice for those who might follow his steps and explore the upper Orinoco jungles: “ continue our researches on the salvaje or great devil of the woods and examine whether it be some unknown species of bear or some very rare monkey analogous to the simia chiropotes potes or siruia satanas that can have given rise to such singular tales”[2]. The monkeys he mentions is the Black Bearded Saki. For photographs of this monkey see below [3].


Sources
[1] Filippo Salvadore Gilij, (1784). Saggio di storia americana: o sia, Storia naturale, civile e sacra de'regni, e delle provincie spagnuole di Terra-Ferma nell' America Meridionale . L. Perego erede Salvioni, 1780. pp 315 note XXII.
[2] Alexander Von Humbodt and Aime Bonpland. (1827). Personal narrative of travels to the equinoctial regions of the New Continent, during the years 1799-1804. Longman, Hurst, Rees, Orme, and Brown... and H. Colburn, pp 81+
[3] Photos of the Black Bearded Saki.


Patagonian Monsters - Cryptozoology, Myths & legends in Patagonia Copyright 2009-2012 by Austin Whittall © 
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